Page 58 - 广西植物2024年1期
P. 58
5 4 广 西 植 物 44 卷
致谢 中国科学院西双版纳热带植物园王晓 17(1): 222.
静提供照片ꎬ谨致谢意ꎮ KIM Cꎬ DO HDKꎬ JUNG Jꎬ et al.ꎬ 2020. Characterization of
the complete chloroplast genome of Korean endemicꎬ
Habenaria cruciformis ( Orchidaceae ) [ J]. Mitochondrial
参考文献: DNA Part Bꎬ 5(3): 3287-3289.
KIM YKꎬ JO Sꎬ CHOON SHꎬ et al.ꎬ 2020. Plastome evolution
AMIRYOUSEFI Aꎬ HYVÖNEN Jꎬ POCZAI Pꎬ 2018. IRscope: an and phylogeny of Orchidaceaeꎬ with 24 new sequences
online program to visualize the junction sites of chloroplast [J]. Front Plant Sciꎬ 11: 22.
genomes[J]. Bioinformaticsꎬ 34(17): 3030-3031. KIM YKꎬ KWAK MHꎬ HONG JRꎬ et al.ꎬ 2017. The complete
BEIER Sꎬ THIEL Tꎬ MUENCH Tꎬ et al.ꎬ 2017. MISA ̄web: a plastome sequence of the endangered orchid Habenaria
web server for microsatellite prediction[J]. Bioinformaticsꎬ radiata ( Orchidaceae) [ J]. Mitochondrial DNA Part Bꎬ
33(16): 2583-2585. 2(2): 704-706.
CHEN MSꎬ YANG ZYꎬ 2022. Genealogical structure and KRESS WJꎬ ERICKSON DLꎬ 2007. A two ̄locus global DNA
differentiation analysis of Carpinus tientaiensis based on Barcode for land plants: the coding rbcL gene complements
single nucleotide polymorphism of chloroplast genome the non ̄coding trnH ̄psbA spacer region [ J]. PLoS ONEꎬ
[J]. Guihaiaꎬ 42(10): 1703- 1716. [陈模舜ꎬ 杨仲毅ꎬ 2(6): e508.
2022. 基于叶绿体基因组 SNP 的天台鹅耳枥谱系结构与 KUANG DYꎬ WU Hꎬ WANG YLꎬ et al.ꎬ 2011. Complete
分化分析[J]. 广西植物ꎬ 42(10): 1703-1716.] chloroplast genome sequence of Magnolia kwangsiensis
CHEN SFꎬ ZHOU YQꎬ CHEN YRꎬ et al.ꎬ 2018. Fastp: an ( Magnoliaceae ): implication for DNA barcoding and
ultra ̄fast all ̄in ̄one FASTQ preprocessor [ J ]. population genetics[J]. Genomeꎬ 54(8): 663-673.
Bioinformaticsꎬ 34(17): 884-890. LAHAYE Rꎬ VAN DER BANK Mꎬ BOGARIN Dꎬ et al.ꎬ
FANG SSꎬ ZHANG LMꎬ QI JMꎬ et al.ꎬ 2021. De novo assembly 2008. DNA barcoding the floras of biodiversity hotspots
of chloroplast genomes of Corchorus capsularis and C. [J]. Proc Natl Acad Sci USAꎬ 105(8): 2923-2928.
olitorius yields species ̄specific InDel markers[J]. Crop Jꎬ LI JWꎬ YE DPꎬ LIU JXꎬ et al.ꎬ 2015. Orchids newly recorded
9(1): 216-226. to China[J]. Plant Divers Resourꎬ 37(3): 246-252.
FRAZER KAꎬ PACHTER Lꎬ POLIAKOV Aꎬ et al.ꎬ 2004. LI LDꎬ JIANG Yꎬ LIU YYꎬ et al.ꎬ 2020. The large single ̄copy
VISTA: computational tools for comparative genomics (LSC) region functions as a highly effective and efficient
[J]. Nucleic Acids Resꎬ 32(Suppl. 2): W273-W279. molecular marker for accurate authentication of medicinal
FU CNꎬ MO ZQꎬ YANG JBꎬ et al.ꎬ 2022. Testing genome Dendrobium species [ J ]. Acta Pharm Sin Bꎬ 10(10):
skimming for species discrimination in the large and 1989-2001.
taxonomically difficult genus Rhododendron [ J]. Mol Ecol LI RJꎬ WU LWꎬ XIN TYꎬ et al.ꎬ 2022. Analysis of chloroplast
Resourꎬ 22(1): 404-414. genomes and development of specific DNA barcodes for
GREINER Sꎬ LEHWARK Pꎬ BOCK Rꎬ 2019. Organellar ̄ identifying the original species of Rhei Radix et Rhizoma
GenomeDRAW(OGDRAW) version 1.3.1: expanded toolkit [J]. Acta Pharm Sinꎬ 57(5): 1495-1505. [李冉郡ꎬ 武立
for the graphical visualization of organellar genomes [ J]. 伟ꎬ 辛天怡ꎬ 等ꎬ 2022. 大黄药材基原物种叶绿体基因组
Nucleic Acids Resꎬ 47(W1): W59-W64. 分析与特异 DNA 条形码开发[J]. 药学学报ꎬ 57(5):
JIN JJꎬ YU WBꎬ YANG JBꎬ et al.ꎬ 2020. GetOrganelle: a fast 1495-1505.]
and versatile toolkit for accurate de novo assembly of LI RZꎬ CAI Jꎬ YANG JBꎬ et al.ꎬ 2022. Plastid phylogenomics
organelle genomes[J]. Genome Biolꎬ 21(1): 241. resolving phylogenetic placement and genera phylogeny of
JIN WTꎬ JIN XHꎬ SCHUITEMAN Aꎬ et al.ꎬ 2014. Molecular Sterculioideae (Malvaceae s. l.)[J]. Guihaiaꎬ 42(1): 25-
systematics of subtribe Orchidinae and Asian taxa of 38. [黎若竹ꎬ 蔡杰ꎬ 杨俊波ꎬ 等ꎬ 2022. 利用叶绿体基因
Habenariinae ( Orchideaeꎬ Orchidaceae) based on plastid 组数据解析锦葵科梧桐亚科的系统位置和属间关系
matKꎬ rbcL and nuclear ITS[J]. Mol Phylogenet Evolꎬ 77: [J]. 广西植物ꎬ 42(1): 25-38.]
41-53. LI ZBꎬ REN Tꎬ DENG JJꎬ et al.ꎬ 2022. Comparative analysis of
JIN WTꎬ SCHUITEMAN Aꎬ CHASE MWꎬ et al.ꎬ 2017. the chloroplast genomes of three cultivars of Hibiscus
Phylogenetics of subtribe Orchidinae s. l. ( Orchidaceaeꎻ mutabilis and its related species [ J]. Guihaiaꎬ 42(12):
Orchidoideae) based on seven markers ( plastid matKꎬ 2007-2020. [李镇兵ꎬ 任婷ꎬ 邓姣姣ꎬ 等ꎬ 2022. 木芙蓉三
psaBꎬ rbcLꎬ trnL ̄Fꎬ trnH ̄psbAꎬ and nuclear nrITSꎬ Xdh): 个品种及近缘种的叶绿体基因组比较分析[J]. 广西植
implications for generic delimitation[J]. BMC Plant Biolꎬ 物ꎬ 42(12): 2007-2020.]